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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050441 through 18771 annotations produced 1 hits



(CG30441):

Annotation Number : CG30441
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050441
Gbrowse : chr2R:1239225-1239621 (-) // 100.0 //
Probeset : 1630985_at
Accessions : protein= NP_724409;, nucleotide= NM_165429;
FlyMine data for FBgn0050441.
VDRC has 3 RNAi stocks for FBgn0050441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 04 of 4 0.80None
Head17 24 of 4 1.80Up
Eye10 13 of 4 1.10None
Thoracicoabdominal ganglion11 13 of 4 1.20None
Salivary gland4 30 of 4 0.46None
Crop11 14 of 4 1.20None
Midgut3 11 of 4 0.40None
Tubule4 00 of 4 0.50Down
Hindgut8 14 of 4 0.80None
Heart5 13 of 4 0.60None
Fat body8 23 of 4 0.88None
Ovary16 14 of 4 1.80Up
Testis2 00 of 4 0.30Down
Male accessory glands14 23 of 4 1.50None
Virgin spermatheca2 00 of 4 0.24Down
Mated spermatheca2 00 of 4 0.24Down
Adult carcass9 10 of 4 0.90None
Larval CNS13 44 of 4 1.46None
Larval Salivary gland7 02 of 4 0.80None
Larval midgut2 11 of 4 0.21Down
Larval tubule8 14 of 4 0.90None
Larval hindgut7 13 of 4 0.79None
Larval fat body8 13 of 4 0.90None
Larval trachea3 12 of 4 0.38None
Larval carcass4 04 of 4 0.48None
S2 cells (growing)4 00 of 4 0.43None
Whole fly9 24 of 4

Looking for FBgn0050441. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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