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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050446 through 18771 annotations produced 1 hits



Tyrosine decarboxylase 2 (Tdc2):

Annotation Number : CG30446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050446
Gbrowse : chr2R:2572476-2577467 (-) // 100.0 //
Probeset : 1632764_at
Accessions : protein= NP_724489;, nucleotide= NM_165483;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004058 // aromatic-L-amino-acid decarboxylase
FlyMine data for FBgn0050446.
Homophila reports that CG30446 is a close match (2e-23) to human gene GAD1;SCP (NP_000808), a gene associated with Cerebral palsy, spastic, symmetric, autosomal recessive, 603513 (3).
TRiP has 1 RNAi stocks for FBgn0050446 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 14 of 4 5.80Up
Head25 ± 34 of 4 2.50Up
Eye2 ± 00 of 4 0.20Down
Thoracicoabdominal ganglion91 ± 24 of 4 8.90Up
Salivary gland31 ± 70 of 4 3.08None
Crop13 ± 10 of 4 1.30None
Midgut11 ± 30 of 4 1.10None
Tubule8 ± 11 of 4 0.90None
Hindgut9 ± 10 of 4 0.90None
Heart4 ± 00 of 4 0.47Down
Fat body7 ± 40 of 4 0.73None
Ovary6 ± 11 of 4 0.60None
Testis8 ± 10 of 4 0.90None
Male accessory glands5 ± 10 of 4 0.50None
Virgin spermatheca9 ± 21 of 4 0.89None
Mated spermatheca11 ± 10 of 4 1.12None
Adult carcass6 ± 20 of 4 0.60None
Larval CNS30 ± 84 of 4 2.95Up
Larval Salivary gland13 ± 00 of 4 1.27None
Larval midgut6 ± 20 of 4 0.63None
Larval tubule9 ± 00 of 4 0.90None
Larval hindgut10 ± 01 of 4 1.04None
Larval fat body3 ± 00 of 4 0.30Down
Larval trachea1 ± 10 of 4 0.19Down
Larval carcass7 ± 00 of 4 0.69None
S2 cells (growing)13 ± 01 of 4 1.33None
Whole fly10 ± 10 of 4

Looking for FBgn0050446. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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