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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050456 through 18771 annotations produced 1 hits



(CG30456):

Annotation Number : CG30456
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050456
Gbrowse : chr2R:12990445-12995047 (+) // 99.79 //
Probeset : 1625227_at
Accessions : protein= NP_001137687; /// NP_611188;, nucleotide= NM_001144215; /// NM_137344;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation
FlyMine data for FBgn0050456.
Homophila reports that CG30456 is a close match (4e-17) to human gene PLEKHG4 (NP_056247), a gene associated with Spinocerebellar ataxia 4, pure Japanese type, 117210 (3).
TRiP has 2 RNAi stocks for FBgn0050456 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050456 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.10Down
Head23 ± 24 of 4 0.60Down
Eye34 ± 24 of 4 0.84None
Thoracicoabdominal ganglion9 ± 10 of 4 0.20Down
Salivary gland169 ± 134 of 4 4.15Up
Crop23 ± 34 of 4 0.60Down
Midgut235 ± 94 of 4 5.80Up
Tubule478 ± 794 of 411.70Up
Hindgut123 ± 14 of 4 3.00Up
Heart72 ± 74 of 4 1.77Up
Fat body27 ± 14 of 4 0.68None
Ovary21 ± 14 of 4 0.50Down
Testis23 ± 24 of 4 0.60Down
Male accessory glands51 ± 44 of 4 1.30None
Virgin spermatheca83 ± 34 of 4 2.04Up
Mated spermatheca95 ± 114 of 4 2.33Up
Adult carcass39 ± 34 of 4 1.00None
Larval CNS6 ± 14 of 4 0.17Down
Larval Salivary gland182 ± 394 of 4 4.48Up
Larval midgut288 ± 134 of 4 7.07Up
Larval tubule249 ± 244 of 4 6.10Up
Larval hindgut133 ± 14 of 4 3.27Up
Larval fat body21 ± 13 of 4 0.50Down
Larval trachea58 ± 64 of 4 1.44Up
Larval carcass65 ± 74 of 4 1.61Up
S2 cells (growing)50 ± 04 of 4 1.23None
Whole fly40 ± 54 of 4

Looking for FBgn0050456. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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