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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050458 through 18771 annotations produced 1 hits



(CG30458):

Annotation Number : CG30458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050458
Gbrowse : chr2R:13045834-13046536 (-) // 100.0 //
Probeset : 1638206_at
Accessions : protein= NP_725663;, nucleotide= NM_166220;
FlyMine data for FBgn0050458.
VDRC has 1 RNAi stocks for FBgn0050458 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10None
Head1 ± 00 of 4 0.10None
Eye1 ± 10 of 4 0.09None
Thoracicoabdominal ganglion2 ± 10 of 4 0.10None
Salivary gland8 ± 20 of 4 0.40None
Crop3 ± 10 of 4 0.20None
Midgut4 ± 10 of 4 0.20None
Tubule1 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.20None
Heart0 ± 00 of 4 0.04None
Fat body3 ± 10 of 4 0.16None
Ovary0 ± 00 of 4 0.00None
Testis4 ± 20 of 4 0.20None
Male accessory glands7 ± 40 of 4 0.40None
Virgin spermatheca1 ± 00 of 4 0.06None
Mated spermatheca2 ± 10 of 4 0.12None
Adult carcass3 ± 10 of 4 0.20None
Larval CNS4 ± 40 of 4 0.22None
Larval Salivary gland4 ± 10 of 4 0.20None
Larval midgut5 ± 10 of 4 0.28None
Larval tubule1 ± 00 of 4 0.10None
Larval hindgut3 ± 10 of 4 0.16None
Larval fat body2 ± 00 of 4 0.10None
Larval trachea3 ± 30 of 4 0.19None
Larval carcass17 ± 20 of 4 0.88None
S2 cells (growing)1 ± 00 of 4 0.06None
Whole fly20 ± 71 of 4

Looking for FBgn0050458. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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