Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050460 through 18771 annotations produced 2 hits



(CG30460):

Annotation Number : CT35742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050460
Gbrowse : chr2R:12968528-12968762 (-) // 100.0 //
Probeset : 1635436_at
Accessions : protein= NP_001097355; /// NP_001137685; /// NP_001137686; /// NP_001163172; /// NP_611186; /// NP_995870; /// NP_995871; /// NP_995872;, nucleotide= NM_001103885; /// NM_001144213; /// NM_001144214; /// NM_001169701; /// NM_137342; /// NM_206148; /// NM_206149; /// NM_206150;
FlyMine data for FBgn0050460.
VDRC has 3 RNAi stocks for FBgn0050460 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 1.00None
Head6 ± 01 of 4 0.80None
Eye9 ± 12 of 4 1.20None
Thoracicoabdominal ganglion10 ± 11 of 4 1.40None
Salivary gland30 ± 80 of 4 3.94None
Crop25 ± 13 of 4 3.30Up
Midgut6 ± 20 of 4 0.80None
Tubule9 ± 01 of 4 1.30Up
Hindgut14 ± 21 of 4 1.90Up
Heart6 ± 12 of 4 0.81None
Fat body10 ± 61 of 4 1.42None
Ovary3 ± 00 of 4 0.50None
Testis3 ± 10 of 4 0.50None
Male accessory glands14 ± 10 of 4 1.80Up
Virgin spermatheca7 ± 10 of 4 0.99None
Mated spermatheca4 ± 11 of 4 0.63None
Adult carcass13 ± 20 of 4 1.70None
Larval CNS8 ± 11 of 4 1.06None
Larval Salivary gland9 ± 10 of 4 1.25None
Larval midgut8 ± 10 of 4 1.09None
Larval tubule12 ± 10 of 4 1.60Up
Larval hindgut10 ± 20 of 4 1.31None
Larval fat body10 ± 10 of 4 1.30None
Larval trachea16 ± 32 of 4 2.17Up
Larval carcass7 ± 00 of 4 1.00None
S2 cells (growing)4 ± 10 of 4 0.59None
Whole fly7 ± 12 of 4



(CG30460):

Annotation Number : CG30460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050460
Gbrowse : chr2R:12954286-12963550 (-) // 100.0 //
Probeset : 1640703_at
Accessions : protein= NP_001097355; /// NP_001137685; /// NP_001137686; /// NP_001163172; /// NP_611186; /// NP_995870; /// NP_995871; /// NP_995872;, nucleotide= NM_001103885; /// NM_001144213; /// NM_001144214; /// NM_001169701; /// NM_137342; /// NM_206148; /// NM_206149; /// NM_206150;
FlyMine data for FBgn0050460.
VDRC has 3 RNAi stocks for FBgn0050460 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 54 of 4 0.40Down
Head104 ± 114 of 4 0.80None
Eye94 ± 84 of 4 0.70Down
Thoracicoabdominal ganglion114 ± 94 of 4 0.80None
Salivary gland187 ± 164 of 4 1.39Up
Crop346 ± 164 of 4 2.60Up
Midgut25 ± 14 of 4 0.20Down
Tubule10 ± 22 of 4 0.10Down
Hindgut230 ± 54 of 4 1.70Up
Heart47 ± 54 of 4 0.36Down
Fat body21 ± 83 of 4 0.16Down
Ovary13 ± 04 of 4 0.10Down
Testis1395 ± 1014 of 410.30Up
Male accessory glands28 ± 44 of 4 0.20Down
Virgin spermatheca19 ± 12 of 4 0.14Down
Mated spermatheca14 ± 31 of 4 0.11Down
Adult carcass90 ± 34 of 4 0.70Down
Larval CNS64 ± 94 of 4 0.48Down
Larval Salivary gland20 ± 44 of 4 0.15Down
Larval midgut33 ± 44 of 4 0.25Down
Larval tubule244 ± 234 of 4 1.80Up
Larval hindgut130 ± 34 of 4 0.97None
Larval fat body204 ± 774 of 4 1.50None
Larval trachea340 ± 1124 of 4 2.53Up
Larval carcass109 ± 94 of 4 0.81None
S2 cells (growing)23 ± 34 of 4 0.17Down
Whole fly134 ± 74 of 4

Looking for FBgn0050460. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime