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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050462 through 18771 annotations produced 2 hits



/// prenyl protease type I (CG30461 /// ste24c):

Annotation Number : CG33142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050461 /// FBgn0050462
Gbrowse : chr2R:12884645-12886099 (-) // 100.0 //
Probeset : 1627427_s_at
Accessions : protein= NP_001027429; /// NP_001027430; /// NP_001027431; /// NP_001027432; /// NP_001027433; /// NP_001027434;, nucleotide= NM_001032258; /// NM_001032259; /// NM_001032260; /// NM_001032261; /// NM_001032262; /// NM_001032263;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inf
FlyMine data for FBgn0050461 /// FBgn0050462.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland6 20 of 4 0.39Down
Crop5 20 of 4 0.30Down
Midgut3 10 of 4 0.20Down
Tubule2 00 of 4 0.20Down
Hindgut4 10 of 4 0.20Down
Heart1 00 of 4 0.09Down
Fat body5 30 of 4 0.34Down
Ovary1 00 of 4 0.10Down
Testis192 204 of 411.20Up
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca2 00 of 4 0.13Down
Mated spermatheca4 10 of 4 0.23Down
Adult carcass4 10 of 4 0.20Down
Larval CNS2 20 of 4 0.17Down
Larval Salivary gland7 20 of 4 0.42Down
Larval midgut4 10 of 4 0.24Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.12Down
Larval fat body22 112 of 4 1.30None
Larval trachea3 20 of 4 0.20Down
Larval carcass1 00 of 4 0.08Down
S2 cells (growing)2 00 of 4 0.16Down
Whole fly17 12 of 4



/// prenyl protease type I (CG30461 /// ste24c):

Annotation Number : CG33142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050461 /// FBgn0050462
Gbrowse : chr2R:12883497-12886099 (-) // 100.0 //
Probeset : 1626003_s_at
Accessions : protein= NP_001027429; /// NP_001027430; /// NP_001027431; /// NP_001027432; /// NP_001027433; /// NP_001027434;, nucleotide= NM_001032258; /// NM_001032259; /// NM_001032260; /// NM_001032261; /// NM_001032262; /// NM_001032263;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inf
FlyMine data for FBgn0050461 /// FBgn0050462.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 04 of 4 0.10Down
Head6 00 of 4 0.10Down
Eye4 10 of 4 0.09Down
Thoracicoabdominal ganglion6 12 of 4 0.10Down
Salivary gland9 11 of 4 0.19Down
Crop4 11 of 4 0.10Down
Midgut5 10 of 4 0.10Down
Tubule9 02 of 4 0.20Down
Hindgut4 00 of 4 0.10Down
Heart6 22 of 4 0.14Down
Fat body7 22 of 4 0.16Down
Ovary4 11 of 4 0.10Down
Testis674 194 of 413.90Up
Male accessory glands9 10 of 4 0.20Down
Virgin spermatheca4 10 of 4 0.10Down
Mated spermatheca5 00 of 4 0.12Down
Adult carcass8 20 of 4 0.20Down
Larval CNS5 14 of 4 0.12Down
Larval Salivary gland6 12 of 4 0.14Down
Larval midgut3 10 of 4 0.06Down
Larval tubule6 11 of 4 0.10Down
Larval hindgut6 04 of 4 0.14Down
Larval fat body60 323 of 4 1.20None
Larval trachea8 22 of 4 0.17Down
Larval carcass4 01 of 4 0.10Down
S2 cells (growing)4 01 of 4 0.09Down
Whole fly48 34 of 4

Looking for FBgn0050462. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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