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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050463 through 18771 annotations produced 2 hits



(CG30463):

Annotation Number : HDC06792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050463
Gbrowse : chr2R:12603128-12604646 (-) // 100.0 //
Probeset : 1631553_at
Accessions : protein= NP_001097341; /// NP_001097342; /// NP_001097343; /// NP_725602; /// NP_725603;, nucleotide= NM_001103871; /// NM_001103872; /// NM_001103873; /// NM_166188; /// NM_166189;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from sequence or structural similarity //
FlyMine data for FBgn0050463.
VDRC has 2 RNAi stocks for FBgn0050463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.40None
Head1 00 of 4 0.80None
Eye3 10 of 4 2.00None
Thoracicoabdominal ganglion2 00 of 4 1.10None
Salivary gland7 10 of 4 3.80Up
Crop1 00 of 4 0.60None
Midgut5 10 of 4 2.80None
Tubule2 00 of 4 1.50Up
Hindgut4 10 of 4 2.50None
Heart3 11 of 4 1.70None
Fat body9 11 of 4 4.92Up
Ovary1 00 of 4 0.60None
Testis1 00 of 4 1.00None
Male accessory glands7 10 of 4 4.20Up
Virgin spermatheca3 00 of 4 1.84None
Mated spermatheca5 10 of 4 2.77None
Adult carcass4 20 of 4 2.50None
Larval CNS1 10 of 4 0.88None
Larval Salivary gland9 10 of 4 5.15Up
Larval midgut1 00 of 4 0.69None
Larval tubule2 10 of 4 1.10None
Larval hindgut1 00 of 4 0.65None
Larval fat body2 00 of 4 1.30None
Larval trachea3 10 of 4 1.74None
Larval carcass4 00 of 4 2.35None
S2 cells (growing)2 10 of 4 1.59None
Whole fly1 10 of 4



(CG30463):

Annotation Number : CG30463
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050463
Gbrowse : chr2R:12560965-12618889 (-) // 100.0 //
Probeset : 1633463_s_at
Accessions : protein= NP_001097341; /// NP_001097342; /// NP_001097343; /// NP_725602; /// NP_725603;, nucleotide= NM_001103871; /// NM_001103872; /// NM_001103873; /// NM_166188; /// NM_166189;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from sequence or structural similarity //
FlyMine data for FBgn0050463.
Homophila reports that CG30463 is a close match (3e-113) to human gene GALNT3;HFTC;HHS (NP_004473), a gene associated with Hyperostosis-hyperphosphatemia syndrome, 610233 (3);Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3).
VDRC has 2 RNAi stocks for FBgn0050463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain246 24 of 4 1.30Up
Head107 34 of 4 0.60Down
Eye104 44 of 4 0.56Down
Thoracicoabdominal ganglion178 54 of 4 1.00None
Salivary gland4071 2524 of 421.91Up
Crop598 284 of 4 3.20Up
Midgut667 164 of 4 3.60Up
Tubule578 774 of 4 3.10Up
Hindgut630 114 of 4 3.40Up
Heart61 54 of 4 0.33Down
Fat body24 64 of 4 0.13Down
Ovary261 104 of 4 1.40Up
Testis157 34 of 4 0.80None
Male accessory glands1651 824 of 4 8.90Up
Virgin spermatheca196 174 of 4 1.06None
Mated spermatheca252 364 of 4 1.36None
Adult carcass82 34 of 4 0.40Down
Larval CNS165 74 of 4 0.89None
Larval Salivary gland3697 1094 of 419.90Up
Larval midgut865 104 of 4 4.66Up
Larval tubule645 104 of 4 3.50Up
Larval hindgut410 254 of 4 2.21Up
Larval fat body11 14 of 4 0.10Down
Larval trachea167 444 of 4 0.90None
Larval carcass209 114 of 4 1.13None
S2 cells (growing)49 24 of 4 0.26Down
Whole fly185 114 of 4

Looking for FBgn0050463. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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