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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050467 through 18771 annotations produced 1 hits



(CG30467):

Annotation Number : CG30467
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050467
Gbrowse : chr2R:11425717-11427520 (+) // 100.0 //
Probeset : 1638590_at
Accessions : protein= NP_611044;, nucleotide= NM_137200;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0050467.
VDRC has 3 RNAi stocks for FBgn0050467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 ± 04 of 4 1.10None
Head40 ± 34 of 4 0.50Down
Eye68 ± 34 of 4 0.90None
Thoracicoabdominal ganglion72 ± 44 of 4 0.90None
Salivary gland35 ± 80 of 4 0.47Down
Crop27 ± 23 of 4 0.40Down
Midgut30 ± 24 of 4 0.40Down
Tubule23 ± 21 of 4 0.30Down
Hindgut29 ± 33 of 4 0.40Down
Heart32 ± 14 of 4 0.43Down
Fat body33 ± 54 of 4 0.44Down
Ovary169 ± 54 of 4 2.20Up
Testis43 ± 24 of 4 0.60Down
Male accessory glands33 ± 20 of 4 0.40Down
Virgin spermatheca29 ± 10 of 4 0.39Down
Mated spermatheca26 ± 31 of 4 0.35Down
Adult carcass30 ± 10 of 4 0.40Down
Larval CNS188 ± 184 of 4 2.47Up
Larval Salivary gland89 ± 74 of 4 1.18None
Larval midgut40 ± 04 of 4 0.53Down
Larval tubule43 ± 24 of 4 0.60Down
Larval hindgut39 ± 14 of 4 0.52Down
Larval fat body39 ± 02 of 4 0.50Down
Larval trachea69 ± 74 of 4 0.91None
Larval carcass52 ± 24 of 4 0.69Down
S2 cells (growing)50 ± 14 of 4 0.66Down
Whole fly76 ± 74 of 4

Looking for FBgn0050467. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime