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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050468 through 18771 annotations produced 1 hits



CG30468 (Ir52c):

Annotation Number : CG30468
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050468
Gbrowse : chr2R:11391705-11393505 (+) // 100.0 //
Probeset : 1634821_at
Accessions : protein= NP_725470;, nucleotide= NM_166098;
FlyMine data for FBgn0050468.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.70None
Head2 ± 00 of 4 1.20None
Eye4 ± 11 of 4 2.51None
Thoracicoabdominal ganglion2 ± 00 of 4 1.10None
Salivary gland9 ± 20 of 4 4.83Up
Crop3 ± 10 of 4 1.70None
Midgut5 ± 10 of 4 3.00Up
Tubule5 ± 11 of 4 3.00Up
Hindgut2 ± 10 of 4 1.60None
Heart1 ± 10 of 4 1.04None
Fat body5 ± 31 of 4 2.81None
Ovary0 ± 00 of 4 0.20None
Testis4 ± 11 of 4 2.20None
Male accessory glands7 ± 31 of 4 4.20None
Virgin spermatheca3 ± 10 of 4 2.00None
Mated spermatheca1 ± 00 of 4 0.84None
Adult carcass4 ± 10 of 4 2.60None
Larval CNS3 ± 11 of 4 1.63None
Larval Salivary gland5 ± 12 of 4 2.99Up
Larval midgut2 ± 10 of 4 1.25None
Larval tubule3 ± 11 of 4 1.60None
Larval hindgut2 ± 11 of 4 1.56None
Larval fat body3 ± 10 of 4 1.90None
Larval trachea2 ± 10 of 4 1.29None
Larval carcass1 ± 00 of 4 0.76None
S2 cells (growing)1 ± 00 of 4 0.93None
Whole fly1 ± 00 of 4

Looking for FBgn0050468. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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