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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050469 through 18771 annotations produced 1 hits

CG30469 (Ir52b):

Annotation Number : CG30469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050469
Gbrowse : chr2R:11389402-11391115 (+) // 100.0 //
Probeset : 1630850_at
Accessions : protein= NP_725469;, nucleotide= NM_166097;
FlyMine data for FBgn0050469.
VDRC has 2 RNAi stocks for FBgn0050469 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.30None
Head0 00 of 4 0.50None
Eye0 00 of 4 0.75None
Thoracicoabdominal ganglion1 00 of 4 1.90None
Salivary gland0 00 of 4 1.03None
Crop1 00 of 4 1.80None
Midgut0 00 of 4 0.50None
Tubule1 00 of 4 1.90Up
Hindgut1 10 of 4 1.70None
Heart2 10 of 4 2.94None
Fat body3 30 of 4 3.58None
Ovary1 00 of 4 1.60None
Testis0 00 of 4 0.70None
Male accessory glands3 10 of 4 3.90None
Virgin spermatheca3 10 of 4 3.94None
Mated spermatheca2 00 of 4 2.64None
Adult carcass4 20 of 4 5.30None
Larval CNS1 10 of 4 1.86None
Larval Salivary gland5 20 of 4 5.89None
Larval midgut1 00 of 4 1.42None
Larval tubule0 00 of 4 1.00None
Larval hindgut1 00 of 4 1.22None
Larval fat body5 00 of 4 6.10Up
Larval trachea0 00 of 4 0.81None
Larval carcass2 00 of 4 2.36None
S2 cells (growing)2 00 of 4 2.31None
Whole fly0 00 of 4

Looking for FBgn0050469. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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