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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050472 through 18771 annotations produced 1 hits


/// (CG17108 /// CG30472):

Annotation Number : CG30472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050472
Gbrowse : chr2R:11310686-11311320 (-) // 100.0 //
Probeset : 1631383_at
Accessions : protein= NP_609439; /// NP_725463;, nucleotide= NM_135595; /// NM_166095;
Interpro : 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase
FlyMine data for FBgn0050472.
VDRC has 2 RNAi stocks for FBgn0050472 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 10 of 4 0.10Down
Eye3 ± 00 of 4 0.15Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland12 ± 30 of 4 0.59None
Crop4 ± 10 of 4 0.20Down
Midgut2 ± 00 of 4 0.10Down
Tubule5 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.10Down
Heart3 ± 11 of 4 0.15Down
Fat body7 ± 42 of 4 0.32Down
Ovary1 ± 00 of 4 0.10Down
Testis377 ± 104 of 417.60Up
Male accessory glands7 ± 21 of 4 0.40Down
Virgin spermatheca6 ± 10 of 4 0.32Down
Mated spermatheca4 ± 10 of 4 0.21Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.10Down
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut2 ± 10 of 4 0.11Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.14Down
Larval fat body87 ± 434 of 4 4.10None
Larval trachea2 ± 21 of 4 0.11Down
Larval carcass2 ± 10 of 4 0.11Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly21 ± 14 of 4

Looking for FBgn0050472. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime