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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050481 through 18771 annotations produced 1 hits



/// mitochondrial ribosomal protein L53 (CG33155 /// mRpL53):

Annotation Number : CG33184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050481 /// FBgn0053155
Gbrowse : chr2R:9841703-9843174 (+) // 100.0 //
Probeset : 1634656_s_at
Accessions : protein= NP_001027417; /// NP_001027418; /// NP_001027419; /// NP_725343;, nucleotide= NM_001032246; /// NM_001032247; /// NM_001032248; /// NM_166022;
Pathway : 0005840 // ribosome // inferred from electronic annotation
FlyMine data for FBgn0050481 /// FBgn0053155.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain561 ± 114 of 4 1.60Up
Head430 ± 164 of 4 1.20Up
Eye515 ± 154 of 4 1.48Up
Thoracicoabdominal ganglion594 ± 244 of 4 1.70Up
Salivary gland433 ± 24 of 4 1.24Up
Crop441 ± 164 of 4 1.30Up
Midgut331 ± 44 of 4 1.00None
Tubule395 ± 104 of 4 1.10Up
Hindgut401 ± 204 of 4 1.20None
Heart348 ± 94 of 4 1.00None
Fat body303 ± 334 of 4 0.87None
Ovary393 ± 44 of 4 1.10Up
Testis150 ± 74 of 4 0.40Down
Male accessory glands427 ± 284 of 4 1.20None
Virgin spermatheca225 ± 204 of 4 0.65Down
Mated spermatheca261 ± 84 of 4 0.75Down
Adult carcass376 ± 144 of 4 1.10None
Larval CNS516 ± 514 of 4 1.48Up
Larval Salivary gland403 ± 384 of 4 1.16None
Larval midgut250 ± 34 of 4 0.72Down
Larval tubule283 ± 154 of 4 0.80Down
Larval hindgut439 ± 94 of 4 1.26Up
Larval fat body284 ± 244 of 4 0.80None
Larval trachea347 ± 564 of 4 1.00None
Larval carcass520 ± 374 of 4 1.49Up
S2 cells (growing)160 ± 84 of 4 0.46Down
Whole fly348 ± 84 of 4

Looking for FBgn0050481. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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