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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050486 through 18771 annotations produced 1 hits


(CG30486):

Annotation Number : CG30486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050486
Gbrowse : chr2R:8735577-8736470 (-) // 100.0 //
Probeset : 1635680_at
Accessions : protein= NP_001137647; /// NP_725234;, nucleotide= NM_001144175; /// NM_165953;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // inferred f
FlyMine data for FBgn0050486.
VDRC has 3 RNAi stocks for FBgn0050486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.06Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.05Down
Fat body0 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands3798 ± 1224 of 4145.50Up
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland0 ± 00 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.03Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly26 ± 10 of 4

Looking for FBgn0050486. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime