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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050488 through 18771 annotations produced 1 hits


(CG30488):

Annotation Number : CG30488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050488
Gbrowse : chr2R:8734443-8735523 (-) // 100.0 //
Probeset : 1628972_at
Accessions : protein= NP_725233;, nucleotide= NM_165952;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // inferred f
FlyMine data for FBgn0050488.
VDRC has 2 RNAi stocks for FBgn0050488 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland11 ± 31 of 4 0.14Down
Crop6 ± 21 of 4 0.10Down
Midgut7 ± 20 of 4 0.10Down
Tubule6 ± 00 of 4 0.10Down
Hindgut5 ± 00 of 4 0.10Down
Heart4 ± 00 of 4 0.06Down
Fat body11 ± 70 of 4 0.14Down
Ovary0 ± 00 of 4 0.00Down
Testis15 ± 34 of 4 0.20Down
Male accessory glands6938 ± 1234 of 487.40Up
Virgin spermatheca4 ± 11 of 4 0.06Down
Mated spermatheca4 ± 10 of 4 0.06Down
Adult carcass14 ± 33 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.04Down
Larval Salivary gland6 ± 10 of 4 0.08Down
Larval midgut4 ± 00 of 4 0.06Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.07Down
Larval fat body6 ± 21 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass3 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly79 ± 44 of 4

Looking for FBgn0050488. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime