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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050489 through 18771 annotations produced 1 hits



Cyp12d1-d /// Cyp12d1-p (Cyp12d1-d /// Cyp12d1-p):

Annotation Number : CG30489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050489 /// FBgn0053503
Gbrowse : chrUextra:247021-248794 (+) // 99.81 // /// chr2R:7007609-7009382 (-) // 100.0 // /// chr2R:7011375-7013148 (-) // 99.81 //
Probeset : 1633401_s_at
Accessions : protein= NP_610635; /// NP_995812;, nucleotide= NM_136791; /// NM_206090;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : "0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fr
FlyMine data for FBgn0050489 /// FBgn0053503.
Homophila reports that CG30489 is a close match (2e-11) to human gene CYP2C8 (NP_000761), a gene associated with Rhabdomyolysis, cerivastatin-induced (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head138 ± 364 of 4 2.20None
Eye12 ± 12 of 4 0.20Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.10Down
Salivary gland12 ± 30 of 4 0.20Down
Crop8 ± 30 of 4 0.10Down
Midgut542 ± 374 of 4 8.80Up
Tubule947 ± 3254 of 415.40Up
Hindgut50 ± 74 of 4 0.80None
Heart101 ± 74 of 4 1.64Up
Fat body226 ± 184 of 4 3.67Up
Ovary65 ± 14 of 4 1.10None
Testis6 ± 10 of 4 0.10Down
Male accessory glands137 ± 174 of 4 2.20Up
Virgin spermatheca549 ± 434 of 4 8.92Up
Mated spermatheca166 ± 344 of 4 2.69None
Adult carcass220 ± 484 of 4 3.60Up
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland13 ± 20 of 4 0.21Down
Larval midgut170 ± 394 of 4 2.77None
Larval tubule486 ± 764 of 4 7.90Up
Larval hindgut47 ± 133 of 4 0.77None
Larval fat body336 ± 944 of 4 5.50None
Larval trachea3 ± 41 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)102 ± 34 of 4 1.67Up
Whole fly61 ± 74 of 4

Looking for FBgn0050489. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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