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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050491 through 18771 annotations produced 1 hits



(CG30491):

Annotation Number : CG30491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050491
Gbrowse : chr2R:3542632-3544275 (+) // 100.0 //
Probeset : 1629809_at
Accessions : protein= NP_610306;, nucleotide= NM_136462;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0050491.
BDGP gene expression has embryonic in situ data for CG30491: 12 pix of staining in 7 body parts.
Homophila reports that CG30491 is a close match (3e-49) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
BioGrid reports that CG30491 interacts with CG8495 .
VDRC has 3 RNAi stocks for FBgn0050491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 ± 94 of 4 2.00Up
Head106 ± 94 of 4 1.00None
Eye57 ± 24 of 4 0.52Down
Thoracicoabdominal ganglion282 ± 44 of 4 2.60Up
Salivary gland352 ± 64 of 4 3.21Up
Crop147 ± 34 of 4 1.30Up
Midgut91 ± 14 of 4 0.80Down
Tubule136 ± 34 of 4 1.20Up
Hindgut157 ± 74 of 4 1.40Up
Heart94 ± 24 of 4 0.86Down
Fat body132 ± 194 of 4 1.21None
Ovary93 ± 24 of 4 0.80Down
Testis413 ± 64 of 4 3.80Up
Male accessory glands80 ± 64 of 4 0.70Down
Virgin spermatheca134 ± 54 of 4 1.22Up
Mated spermatheca158 ± 94 of 4 1.44Up
Adult carcass116 ± 24 of 4 1.10None
Larval CNS98 ± 34 of 4 0.89Down
Larval Salivary gland330 ± 104 of 4 3.01Up
Larval midgut94 ± 64 of 4 0.86None
Larval tubule90 ± 54 of 4 0.80Down
Larval hindgut139 ± 124 of 4 1.27None
Larval fat body113 ± 174 of 4 1.00None
Larval trachea85 ± 44 of 4 0.77Down
Larval carcass92 ± 94 of 4 0.84None
S2 cells (growing)74 ± 34 of 4 0.68Down
Whole fly109 ± 24 of 4

Looking for FBgn0050491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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