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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050493 through 18771 annotations produced 2 hits



/// (CG30493 /// CG30496):

Annotation Number : CG30496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050496
Gbrowse : chr2R:3587008-3589054 (+) // 100.0 //
Probeset : 1630298_at
Accessions : protein= NP_724595;, nucleotide= NM_165551;
FlyMine data for FBgn0050496.
BDGP gene expression has embryonic in situ data for CG30496: 4 pix of staining in 1 body parts.
Homophila reports that CG30496 is a close match (2e-22) to human gene GLML;GVM;VMGLOM (NP_444504), a gene associated with Glomuvenous malformations, 138000 (3).
VDRC has 2 RNAi stocks for FBgn0050496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.60Down
Head16 ± 32 of 4 0.50Down
Eye12 ± 11 of 4 0.38Down
Thoracicoabdominal ganglion15 ± 21 of 4 0.50Down
Salivary gland18 ± 20 of 4 0.56Down
Crop32 ± 10 of 4 1.00None
Midgut28 ± 40 of 4 0.80None
Tubule17 ± 31 of 4 0.50Down
Hindgut8 ± 20 of 4 0.20Down
Heart24 ± 13 of 4 0.73Down
Fat body32 ± 72 of 4 0.98None
Ovary46 ± 34 of 4 1.40Up
Testis178 ± 44 of 4 5.30Up
Male accessory glands45 ± 23 of 4 1.40Up
Virgin spermatheca20 ± 20 of 4 0.60Down
Mated spermatheca13 ± 20 of 4 0.41Down
Adult carcass21 ± 20 of 4 0.60Down
Larval CNS40 ± 14 of 4 1.20Up
Larval Salivary gland49 ± 34 of 4 1.46Up
Larval midgut28 ± 30 of 4 0.83None
Larval tubule26 ± 43 of 4 0.80None
Larval hindgut27 ± 50 of 4 0.80None
Larval fat body34 ± 51 of 4 1.00None
Larval trachea33 ± 74 of 4 1.01None
Larval carcass26 ± 20 of 4 0.80None
S2 cells (growing)81 ± 34 of 4 2.43Up
Whole fly33 ± 24 of 4



/// lethal (2) 08492 (CG30493 /// l(2)08492):

Annotation Number : CG30493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050493
Gbrowse : chr2R:3586785-3591008 (+) // 100.0 //
Probeset : 1631455_at
Accessions : protein= NP_724594;, nucleotide= NM_165550;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0050493.
BioGrid reports that CG30493 interacts with CG9757 .
VDRC has 2 RNAi stocks for FBgn0050493 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 24 of 4 0.70Down
Head110 ± 74 of 4 1.00None
Eye85 ± 14 of 4 0.82None
Thoracicoabdominal ganglion110 ± 64 of 4 1.10None
Salivary gland112 ± 54 of 4 1.07None
Crop107 ± 64 of 4 1.00None
Midgut114 ± 14 of 4 1.10None
Tubule111 ± 24 of 4 1.10Up
Hindgut118 ± 24 of 4 1.10None
Heart115 ± 64 of 4 1.10None
Fat body99 ± 54 of 4 0.94None
Ovary77 ± 14 of 4 0.70None
Testis35 ± 24 of 4 0.30Down
Male accessory glands30 ± 34 of 4 0.30Down
Virgin spermatheca149 ± 84 of 4 1.42Up
Mated spermatheca135 ± 74 of 4 1.29Up
Adult carcass227 ± 94 of 4 2.20Up
Larval CNS92 ± 64 of 4 0.88None
Larval Salivary gland62 ± 24 of 4 0.60Down
Larval midgut103 ± 54 of 4 0.99None
Larval tubule120 ± 14 of 4 1.10None
Larval hindgut128 ± 84 of 4 1.22None
Larval fat body44 ± 24 of 4 0.40Down
Larval trachea44 ± 54 of 4 0.43Down
Larval carcass145 ± 144 of 4 1.39None
S2 cells (growing)42 ± 14 of 4 0.41Down
Whole fly105 ± 94 of 4

Looking for FBgn0050493. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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