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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050496 through 18771 annotations produced 1 hits



/// (CG30493 /// CG30496):

Annotation Number : CG30496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050496
Gbrowse : chr2R:3587008-3589054 (+) // 100.0 //
Probeset : 1630298_at
Accessions : protein= NP_724595;, nucleotide= NM_165551;
FlyMine data for FBgn0050496.
BDGP gene expression has embryonic in situ data for CG30496: 4 pix of staining in 1 body parts.
Homophila reports that CG30496 is a close match (2e-22) to human gene GLML;GVM;VMGLOM (NP_444504), a gene associated with Glomuvenous malformations, 138000 (3).
VDRC has 2 RNAi stocks for FBgn0050496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 14 of 4 0.60Down
Head16 32 of 4 0.50Down
Eye12 11 of 4 0.38Down
Thoracicoabdominal ganglion15 21 of 4 0.50Down
Salivary gland18 20 of 4 0.56Down
Crop32 10 of 4 1.00None
Midgut28 40 of 4 0.80None
Tubule17 31 of 4 0.50Down
Hindgut8 20 of 4 0.20Down
Heart24 13 of 4 0.73Down
Fat body32 72 of 4 0.98None
Ovary46 34 of 4 1.40Up
Testis178 44 of 4 5.30Up
Male accessory glands45 23 of 4 1.40Up
Virgin spermatheca20 20 of 4 0.60Down
Mated spermatheca13 20 of 4 0.41Down
Adult carcass21 20 of 4 0.60Down
Larval CNS40 14 of 4 1.20Up
Larval Salivary gland49 34 of 4 1.46Up
Larval midgut28 30 of 4 0.83None
Larval tubule26 43 of 4 0.80None
Larval hindgut27 50 of 4 0.80None
Larval fat body34 51 of 4 1.00None
Larval trachea33 74 of 4 1.01None
Larval carcass26 20 of 4 0.80None
S2 cells (growing)81 34 of 4 2.43Up
Whole fly33 24 of 4

Looking for FBgn0050496. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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