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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050502 through 18771 annotations produced 1 hits



(CG30502):

Annotation Number : CG30502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050502
Gbrowse : chr2R:3333680-3339056 (-) // 99.72 //
Probeset : 1639923_at
Accessions : protein= NP_610279;, nucleotide= NM_136435;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electro
Interpro : 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred fr
FlyMine data for FBgn0050502.
BioGrid reports that CG30502 interacts with CG5792 CG6450 CG6457 CG6519 CG9554 CG9704 .
VDRC has 1 RNAi stocks for FBgn0050502 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 20 of 4 0.10Down
Head13 00 of 4 0.20Down
Eye5 20 of 4 0.09Down
Thoracicoabdominal ganglion5 10 of 4 0.10Down
Salivary gland5 20 of 4 0.08Down
Crop7 20 of 4 0.10Down
Midgut823 114 of 413.20Up
Tubule55 73 of 4 0.90None
Hindgut241 64 of 4 3.90Up
Heart2 00 of 4 0.04Down
Fat body8 20 of 4 0.13Down
Ovary3 00 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands7 30 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.03Down
Mated spermatheca3 00 of 4 0.05Down
Adult carcass23 30 of 4 0.40Down
Larval CNS4 10 of 4 0.07Down
Larval Salivary gland4 10 of 4 0.07Down
Larval midgut570 984 of 4 9.12Up
Larval tubule12 30 of 4 0.20Down
Larval hindgut303 264 of 4 4.85Up
Larval fat body3 10 of 4 0.10Down
Larval trachea3 10 of 4 0.05Down
Larval carcass10 10 of 4 0.16Down
S2 cells (growing)11 00 of 4 0.19Down
Whole fly62 54 of 4

Looking for FBgn0050502. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime