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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051008 through 18771 annotations produced 1 hits


Annotation Number : CG31008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051008
Gbrowse : chr3R:26815198-26815728 (-) // 100.0 //
Probeset : 1628524_at
Accessions : protein= NP_733411;, nucleotide= NM_170532;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051008.
BioGrid reports that CG31008 interacts with CG5537 CG6534 .
VDRC has 3 RNAi stocks for FBgn0051008 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye6 10 of 4 0.11Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 00 of 4 0.04Down
Crop2 10 of 4 0.00Down
Midgut3 10 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body1 00 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis1064 174 of 418.10Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca3 00 of 4 0.05Down
Mated spermatheca4 10 of 4 0.07Down
Adult carcass1 00 of 4 0.00Down
Larval CNS1 00 of 4 0.02Down
Larval Salivary gland5 10 of 4 0.09Down
Larval midgut2 00 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body60 312 of 4 1.00None
Larval trachea4 50 of 4 0.08Down
Larval carcass2 00 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly58 74 of 4

Looking for FBgn0051008. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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