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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051013 through 18771 annotations produced 1 hits



(CG31013):

Annotation Number : CG31013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051013
Gbrowse : chr3R:26469602-26471555 (-) // 100.0 //
Probeset : 1636197_at
Accessions : protein= NP_733394;, nucleotide= NM_170515;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005488 // binding //
FlyMine data for FBgn0051013.
VDRC has 2 RNAi stocks for FBgn0051013 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20Down
Head4 ± 10 of 4 0.30Down
Eye2 ± 00 of 4 0.19Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland5 ± 20 of 4 0.39Down
Crop4 ± 10 of 4 0.30Down
Midgut11 ± 30 of 4 0.80None
Tubule5 ± 00 of 4 0.40Down
Hindgut5 ± 10 of 4 0.40Down
Heart1 ± 00 of 4 0.09Down
Fat body1 ± 00 of 4 0.13Down
Ovary2 ± 00 of 4 0.20Down
Testis189 ± 84 of 413.60Up
Male accessory glands8 ± 10 of 4 0.60Down
Virgin spermatheca3 ± 20 of 4 0.24Down
Mated spermatheca8 ± 20 of 4 0.57None
Adult carcass9 ± 30 of 4 0.70None
Larval CNS2 ± 10 of 4 0.18Down
Larval Salivary gland8 ± 30 of 4 0.60None
Larval midgut18 ± 10 of 4 1.33None
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.31Down
Larval fat body30 ± 153 of 4 2.20None
Larval trachea3 ± 21 of 4 0.23Down
Larval carcass3 ± 10 of 4 0.24Down
S2 cells (growing)3 ± 10 of 4 0.28Down
Whole fly14 ± 03 of 4

Looking for FBgn0051013. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime