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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051017 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:26429902-26431866 (+) // 100.0 //):

Annotation Number : CG31017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1637713_at
Accessions : protein= EC:1.13.11.- /// EC:1.14.11.2, nucleotide=
Interpro : 0055114 // oxidation reduction // inferred from electronic annotation


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland10 ± 10 of 4 0.35Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.20Down
Hindgut1 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.06Down
Fat body0 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis5 ± 31 of 4 0.20Down
Male accessory glands3347 ± 1154 of 4107.90Up
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.05Down
Larval Salivary gland3 ± 10 of 4 0.12Down
Larval midgut3 ± 10 of 4 0.12Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly31 ± 14 of 4

Looking for FBgn0051017. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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