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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051021 through 18771 annotations produced 1 hits



(CG31021):

Annotation Number : CG31021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051021
Gbrowse : chr3R:26427927-26429731 (+) // 100.0 //
Probeset : 1632982_at
Accessions : protein= NP_733392;, nucleotide= NM_170513;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005488 // binding //
FlyMine data for FBgn0051021.
VDRC has 3 RNAi stocks for FBgn0051021 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head4 ± 10 of 4 0.30Down
Eye2 ± 10 of 4 0.16Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.40Down
Salivary gland9 ± 40 of 4 0.61None
Crop4 ± 10 of 4 0.30Down
Midgut3 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.20Down
Heart3 ± 00 of 4 0.21Down
Fat body5 ± 40 of 4 0.32Down
Ovary4 ± 10 of 4 0.30Down
Testis5 ± 00 of 4 0.30Down
Male accessory glands2569 ± 1234 of 4162.60Up
Virgin spermatheca5 ± 20 of 4 0.31Down
Mated spermatheca3 ± 10 of 4 0.23Down
Adult carcass6 ± 10 of 4 0.40Down
Larval CNS3 ± 10 of 4 0.20Down
Larval Salivary gland2 ± 00 of 4 0.14Down
Larval midgut4 ± 20 of 4 0.28Down
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.27Down
Larval fat body9 ± 20 of 4 0.60None
Larval trachea2 ± 21 of 4 0.13Down
Larval carcass3 ± 10 of 4 0.22Down
S2 cells (growing)2 ± 00 of 4 0.13Down
Whole fly15 ± 23 of 4

Looking for FBgn0051021. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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