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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051028 through 18771 annotations produced 1 hits



(CG31028):

Annotation Number : CG31028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051028
Gbrowse : chr3R:25992686-25996925 (-) // 100.0 //
Probeset : 1629991_a_at
Accessions : protein= NP_733351; /// NP_733352;, nucleotide= NM_170472; /// NM_170473;
Interpro : 0046872 // metal ion binding // inferred from electronic annotation
FlyMine data for FBgn0051028.
BDGP gene expression has embryonic in situ data for CG31028: 16 pix of staining in 15 body parts.
VDRC has 4 RNAi stocks for FBgn0051028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.80None
Head15 ± 20 of 4 4.40Up
Eye4 ± 00 of 4 1.24None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland1 ± 00 of 4 0.40None
Crop40 ± 14 of 411.30Up
Midgut3 ± 00 of 4 0.80None
Tubule2 ± 00 of 4 0.60Down
Hindgut22 ± 10 of 4 6.10Up
Heart4 ± 10 of 4 1.24None
Fat body2 ± 10 of 4 0.71None
Ovary2 ± 00 of 4 0.70None
Testis7 ± 20 of 4 2.00None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca1 ± 00 of 4 0.45None
Mated spermatheca2 ± 00 of 4 0.56None
Adult carcass9 ± 40 of 4 2.60None
Larval CNS11 ± 30 of 4 3.06Up
Larval Salivary gland7 ± 00 of 4 2.13None
Larval midgut2 ± 00 of 4 0.67None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut46 ± 44 of 412.87Up
Larval fat body2 ± 00 of 4 0.60None
Larval trachea107 ± 134 of 429.81Up
Larval carcass64 ± 14 of 418.03Up
S2 cells (growing)1 ± 00 of 4 0.44None
Whole fly3 ± 10 of 4

Looking for FBgn0051028. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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