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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051036 through 18771 annotations produced 1 hits



(CG31036):

Annotation Number : CG31036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051036
Gbrowse : chr3R:25733830-25738614 (+) // 100.0 //
Probeset : 1633971_at
Accessions : protein= NP_001138125; /// NP_733329;, nucleotide= NM_001144653; /// NM_170450;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051036.
BDGP gene expression has embryonic in situ data for CG31036: 20 pix of staining in 16 body parts.
BioGrid reports that CG31036 interacts with CG3151 CG5203 CG3217 CG4394 CG4767 CG5062 CG5643 CG7524 CG8286 CG8368 CG9986 CG31094 .
VDRC has 2 RNAi stocks for FBgn0051036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.40None
Head15 ± 20 of 4 2.50Up
Eye61 ± 44 of 4 9.72Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland211 ± 174 of 433.26Up
Crop1 ± 00 of 4 0.20None
Midgut3 ± 10 of 4 0.60None
Tubule2 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.26None
Fat body2 ± 20 of 4 0.38None
Ovary3 ± 10 of 4 0.50None
Testis9 ± 13 of 4 1.50None
Male accessory glands0 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.13Down
Mated spermatheca1 ± 00 of 4 0.18Down
Adult carcass9 ± 20 of 4 1.50None
Larval CNS1 ± 10 of 4 0.25None
Larval Salivary gland1 ± 00 of 4 0.24None
Larval midgut2 ± 10 of 4 0.44None
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.40None
Larval fat body2 ± 00 of 4 0.40None
Larval trachea2 ± 10 of 4 0.34None
Larval carcass2 ± 00 of 4 0.43None
S2 cells (growing)0 ± 00 of 4 0.09Down
Whole fly6 ± 10 of 4

Looking for FBgn0051036. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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