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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051040 through 18771 annotations produced 1 hits



Cog7 (Cog7):

Annotation Number : CG31040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051040
Gbrowse : chr3R:25756267-25758779 (-) // 100.0 //
Probeset : 1631831_at
Accessions : protein= NP_651750;, nucleotide= NM_143493;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequenc
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051040.
Homophila reports that CG31040 is a close match (2e-66) to human gene CDG2E;COG7 (NP_705831), a gene associated with Congenital disorder of glycosylation, type IIe, 608779 (3).
VDRC has 2 RNAi stocks for FBgn0051040 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 34 of 4 1.60Up
Head66 34 of 4 1.00None
Eye75 44 of 4 1.14None
Thoracicoabdominal ganglion118 44 of 4 1.80Up
Salivary gland210 204 of 4 3.19Up
Crop119 54 of 4 1.80Up
Midgut118 54 of 4 1.80Up
Tubule104 34 of 4 1.60Up
Hindgut78 44 of 4 1.20None
Heart44 24 of 4 0.67Down
Fat body43 44 of 4 0.67Down
Ovary87 34 of 4 1.30Up
Testis29 14 of 4 0.40Down
Male accessory glands128 34 of 4 1.90Up
Virgin spermatheca69 44 of 4 1.05None
Mated spermatheca85 44 of 4 1.30Up
Adult carcass48 24 of 4 0.70Down
Larval CNS81 54 of 4 1.23Up
Larval Salivary gland320 164 of 4 4.87Up
Larval midgut86 64 of 4 1.31Up
Larval tubule95 64 of 4 1.40Up
Larval hindgut83 44 of 4 1.27Up
Larval fat body67 64 of 4 1.00None
Larval trachea73 44 of 4 1.12Up
Larval carcass83 34 of 4 1.27Up
S2 cells (growing)105 54 of 4 1.61Up
Whole fly65 14 of 4

Looking for FBgn0051040. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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