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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051055 through 18771 annotations produced 1 hits


(CG31055):

Annotation Number : CG31055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051055
Gbrowse : chr3R:23511351-23513856 (-) // 100.0 //
Probeset : 1634177_a_at
Accessions : protein= NP_733225; /// NP_733226; /// NP_733227;, nucleotide= NM_170346; /// NM_170347; /// NM_170348;
FlyMine data for FBgn0051055.
VDRC has 3 RNAi stocks for FBgn0051055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head4 ± 00 of 4 0.20Down
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland11 ± 10 of 4 0.60Down
Crop4 ± 10 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 11 of 4 0.10Down
Heart3 ± 10 of 4 0.20Down
Fat body5 ± 11 of 4 0.30Down
Ovary3 ± 00 of 4 0.20Down
Testis295 ± 64 of 415.60Up
Male accessory glands6 ± 31 of 4 0.30Down
Virgin spermatheca5 ± 10 of 4 0.28Down
Mated spermatheca3 ± 10 of 4 0.20Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS1 ± 00 of 4 0.10Down
Larval Salivary gland3 ± 10 of 4 0.17Down
Larval midgut2 ± 10 of 4 0.13Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.09Down
Larval fat body49 ± 224 of 4 2.60None
Larval trachea2 ± 10 of 4 0.12Down
Larval carcass3 ± 10 of 4 0.19Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly19 ± 14 of 4

Looking for FBgn0051055. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime