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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051064 through 18771 annotations produced 2 hits



(CG31064):

Annotation Number : CG31064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051064
Gbrowse : chr3R:23055538-23064803 (-) // 100.0 //
Probeset : 1641182_at
Accessions : protein= NP_651545; /// NP_733203; /// NP_733204;, nucleotide= NM_143288; /// NM_170324; /// NM_170325;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0051064.
VDRC has 3 RNAi stocks for FBgn0051064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 24 of 4 1.60Up
Head25 ± 24 of 4 1.20None
Eye21 ± 24 of 4 1.00None
Thoracicoabdominal ganglion31 ± 14 of 4 1.50Up
Salivary gland61 ± 34 of 4 2.92Up
Crop30 ± 14 of 4 1.40Up
Midgut12 ± 24 of 4 0.60Down
Tubule30 ± 14 of 4 1.40Up
Hindgut31 ± 34 of 4 1.50Up
Heart29 ± 34 of 4 1.40None
Fat body29 ± 44 of 4 1.41Up
Ovary33 ± 14 of 4 1.60Up
Testis7 ± 10 of 4 0.30Down
Male accessory glands27 ± 34 of 4 1.30None
Virgin spermatheca25 ± 24 of 4 1.19None
Mated spermatheca21 ± 14 of 4 1.03None
Adult carcass30 ± 44 of 4 1.40None
Larval CNS25 ± 54 of 4 1.22None
Larval Salivary gland49 ± 34 of 4 2.33Up
Larval midgut22 ± 24 of 4 1.07None
Larval tubule35 ± 24 of 4 1.70Up
Larval hindgut38 ± 14 of 4 1.80Up
Larval fat body36 ± 31 of 4 1.70Up
Larval trachea25 ± 34 of 4 1.23None
Larval carcass24 ± 24 of 4 1.16None
S2 cells (growing)55 ± 44 of 4 2.64Up
Whole fly21 ± 24 of 4



(CG31064):

Annotation Number : CG31064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051064
Gbrowse : chr3R:23056482-23064803 (-) // 100.0 //
Probeset : 1630434_a_at
Accessions : protein= NP_651545; /// NP_733203; /// NP_733204;, nucleotide= NM_143288; /// NM_170324; /// NM_170325;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0051064.
VDRC has 3 RNAi stocks for FBgn0051064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain519 ± 24 of 418.00Up
Head140 ± 104 of 4 4.90Up
Eye154 ± 74 of 4 5.35Up
Thoracicoabdominal ganglion531 ± 44 of 418.40Up
Salivary gland11 ± 20 of 4 0.38Down
Crop8 ± 00 of 4 0.30Down
Midgut12 ± 00 of 4 0.40Down
Tubule7 ± 00 of 4 0.30Down
Hindgut7 ± 10 of 4 0.30Down
Heart6 ± 02 of 4 0.21Down
Fat body6 ± 30 of 4 0.21Down
Ovary9 ± 11 of 4 0.30Down
Testis1 ± 01 of 4 0.10Down
Male accessory glands5 ± 10 of 4 0.20Down
Virgin spermatheca4 ± 11 of 4 0.15Down
Mated spermatheca3 ± 00 of 4 0.12Down
Adult carcass13 ± 10 of 4 0.50Down
Larval CNS241 ± 144 of 4 8.37Up
Larval Salivary gland13 ± 12 of 4 0.46Down
Larval midgut10 ± 12 of 4 0.35Down
Larval tubule4 ± 20 of 4 0.20Down
Larval hindgut6 ± 01 of 4 0.23Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea6 ± 51 of 4 0.21Down
Larval carcass8 ± 01 of 4 0.28Down
S2 cells (growing)10 ± 03 of 4 0.38Down
Whole fly28 ± 24 of 4

Looking for FBgn0051064. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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