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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051088 through 18771 annotations produced 1 hits



(CG31088):

Annotation Number : CG31088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051088
Gbrowse : chr3R:11775922-11776665 (-) // 100.0 //
Probeset : 1631282_at
Accessions : protein= NP_732095;, nucleotide= NM_169691;
FlyMine data for FBgn0051088.
BDGP gene expression has embryonic in situ data for CG31088: 19 pix of staining in 16 body parts.
VDRC has 3 RNAi stocks for FBgn0051088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head6 00 of 4 0.20Down
Eye5 10 of 4 0.15Down
Thoracicoabdominal ganglion7 20 of 4 0.20Down
Salivary gland20 10 of 4 0.55None
Crop8 00 of 4 0.20Down
Midgut4 10 of 4 0.10Down
Tubule7 00 of 4 0.20Down
Hindgut9 10 of 4 0.20Down
Heart2 10 of 4 0.07Down
Fat body10 20 of 4 0.29Down
Ovary4 00 of 4 0.10Down
Testis552 174 of 415.10Up
Male accessory glands6 30 of 4 0.20Down
Virgin spermatheca5 10 of 4 0.14Down
Mated spermatheca7 00 of 4 0.19Down
Adult carcass7 50 of 4 0.20Down
Larval CNS6 10 of 4 0.17Down
Larval Salivary gland5 20 of 4 0.15Down
Larval midgut5 20 of 4 0.15Down
Larval tubule7 31 of 4 0.20Down
Larval hindgut6 11 of 4 0.17Down
Larval fat body91 423 of 4 2.50None
Larval trachea6 52 of 4 0.19Down
Larval carcass4 10 of 4 0.13Down
S2 cells (growing)12 11 of 4 0.33Down
Whole fly36 64 of 4

Looking for FBgn0051088. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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