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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051098 through 18771 annotations produced 1 hits



(CG31098):

Annotation Number : CG31098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051098
Gbrowse : chr3R:21117217-21118693 (-) // 100.0 //
Probeset : 1631834_at
Accessions : protein= NP_733091;, nucleotide= NM_170212;
FlyMine data for FBgn0051098.
BDGP gene expression has embryonic in situ data for CG31098: 13 pix of staining in 5 body parts.
VDRC has 1 RNAi stocks for FBgn0051098 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain260 ± 84 of 4 1.90Up
Head132 ± 84 of 4 1.00None
Eye95 ± 64 of 4 0.70Down
Thoracicoabdominal ganglion281 ± 274 of 4 2.10Up
Salivary gland760 ± 244 of 4 5.54Up
Crop219 ± 74 of 4 1.60Up
Midgut474 ± 84 of 4 3.50Up
Tubule459 ± 104 of 4 3.30Up
Hindgut899 ± 164 of 4 6.60Up
Heart80 ± 54 of 4 0.59Down
Fat body58 ± 44 of 4 0.43Down
Ovary182 ± 44 of 4 1.30Up
Testis24 ± 14 of 4 0.20Down
Male accessory glands76 ± 34 of 4 0.60Down
Virgin spermatheca53 ± 34 of 4 0.39Down
Mated spermatheca49 ± 34 of 4 0.36Down
Adult carcass71 ± 24 of 4 0.50Down
Larval CNS103 ± 84 of 4 0.75Down
Larval Salivary gland167 ± 74 of 4 1.22Up
Larval midgut519 ± 514 of 4 3.79Up
Larval tubule492 ± 234 of 4 3.60Up
Larval hindgut1003 ± 644 of 4 7.31Up
Larval fat body64 ± 74 of 4 0.50Down
Larval trachea199 ± 154 of 4 1.46Up
Larval carcass167 ± 74 of 4 1.22Up
S2 cells (growing)164 ± 54 of 4 1.20Up
Whole fly137 ± 84 of 4

Looking for FBgn0051098. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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