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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051109 through 18771 annotations produced 1 hits



(CG31109):

Annotation Number : CG31109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051109
Gbrowse : chr3R:20879196-20880356 (-) // 100.0 //
Probeset : 1631719_at
Accessions : protein= NP_733073;, nucleotide= NM_170194;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0051109.
BDGP gene expression has embryonic in situ data for CG31109: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0051109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 54 of 4 1.30Up
Head50 34 of 4 0.50Down
Eye65 14 of 4 0.63Down
Thoracicoabdominal ganglion102 64 of 4 1.00None
Salivary gland88 54 of 4 0.86None
Crop49 34 of 4 0.50Down
Midgut35 34 of 4 0.30Down
Tubule46 14 of 4 0.50Down
Hindgut40 24 of 4 0.40Down
Heart45 34 of 4 0.44Down
Fat body31 54 of 4 0.31Down
Ovary236 44 of 4 2.30Up
Testis83 14 of 4 0.80None
Male accessory glands59 64 of 4 0.60Down
Virgin spermatheca30 14 of 4 0.30Down
Mated spermatheca29 24 of 4 0.29Down
Adult carcass37 44 of 4 0.40Down
Larval CNS110 44 of 4 1.07None
Larval Salivary gland58 44 of 4 0.56Down
Larval midgut26 34 of 4 0.26Down
Larval tubule41 04 of 4 0.40Down
Larval hindgut35 14 of 4 0.34Down
Larval fat body50 34 of 4 0.50Down
Larval trachea89 84 of 4 0.87None
Larval carcass35 34 of 4 0.35Down
S2 cells (growing)49 34 of 4 0.48Down
Whole fly103 84 of 4

Looking for FBgn0051109. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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