FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0051116 through 18771 annotations produced 2 hits

Chloride channel-a (ClC-a):

Annotation Number : CT34520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051116
Gbrowse : chr3R:7635889-7636262 (-) // 100.0 //
Probeset : 1640203_at
Accessions : protein= NP_001097751; /// NP_001097752; /// NP_001163592; /// NP_731634; /// NP_731635; /// NP_788639;, nucleotide= NM_001104281; /// NM_001104282; /// NM_001170121; /// NM_169431; /// NM_169432; /// NM_176462;
Pathway : 0005626 // insoluble fraction // inferred from sequence or structural similarity /// 0005902 // microvillus // inferred
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0051116.
BDGP gene expression has embryonic in situ data for CG31116: 20 pix of staining in 7 body parts.
VDRC has 1 RNAi stocks for FBgn0051116 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	3 of 4	1.20	None
Head	7 ± 2	0 of 4	0.60	None
Eye	9 ± 1	0 of 4	0.81	None
Thoracicoabdominal ganglion	12 ± 1	1 of 4	1.00	None
Salivary gland	43 ± 6	2 of 4	3.58	Up
Crop	12 ± 1	3 of 4	1.00	None
Midgut	36 ± 2	4 of 4	3.00	Up
Tubule	16 ± 1	3 of 4	1.40	Up
Hindgut	12 ± 1	1 of 4	1.00	None
Heart	12 ± 1	2 of 4	1.05	None
Fat body	21 ± 4	0 of 4	1.76	Up
Ovary	12 ± 0	4 of 4	1.10	None
Testis	7 ± 2	2 of 4	0.60	None
Male accessory glands	23 ± 4	2 of 4	1.90	None
Virgin spermatheca	10 ± 5	0 of 4	0.81	None
Mated spermatheca	18 ± 3	0 of 4	1.48	None
Adult carcass	20 ± 3	2 of 4	1.70	None
Larval CNS	9 ± 1	3 of 4	0.76	None
Larval Salivary gland	24 ± 8	2 of 4	1.98	None
Larval midgut	31 ± 3	4 of 4	2.55	Up
Larval tubule	20 ± 2	4 of 4	1.70	None
Larval hindgut	19 ± 2	3 of 4	1.56	None
Larval fat body	3 ± 1	0 of 4	0.30	Down
Larval trachea	10 ± 6	2 of 4	0.89	None
Larval carcass	20 ± 2	4 of 4	1.65	None
S2 cells (growing)	15 ± 3	2 of 4	1.22	None
Whole fly	12 ± 2	1 of 4

Chloride channel-a (ClC-a):

Annotation Number : CG31116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051116
Gbrowse : chr3R:7622965-7632283 (-) // 100.0 //
Probeset : 1629786_a_at
Accessions : protein= NP_001097751; /// NP_001097752; /// NP_001163592; /// NP_731634; /// NP_731635; /// NP_788639;, nucleotide= NM_001104281; /// NM_001104282; /// NM_001170121; /// NM_169431; /// NM_169432; /// NM_176462;
Pathway : 0005626 // insoluble fraction // inferred from sequence or structural similarity /// 0005902 // microvillus // inferred
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0051116.
BDGP gene expression has embryonic in situ data for CG31116: 20 pix of staining in 7 body parts.
Homophila reports that CG31116 is a close match (2e-14) to human gene CLC7;CLCN7;OPTA2;OPTB4 (NP_001278), a gene associated with Osteopetrosis, autosomal dominant 2, 166600 (3);Osteopetrosis, autosomal recessive 4, 611490 (3).
VDRC has 1 RNAi stocks for FBgn0051116 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	343 ± 8	4 of 4	3.20	Up
Head	340 ± 2	4 of 4	3.20	Up
Eye	530 ± 17	4 of 4	5.00	Up
Thoracicoabdominal ganglion	489 ± 13	4 of 4	4.60	Up
Salivary gland	818 ± 19	4 of 4	7.72	Up
Crop	56 ± 2	4 of 4	0.50	Down
Midgut	125 ± 5	4 of 4	1.20	Up
Tubule	1162 ± 151	4 of 4	11.00	Up
Hindgut	322 ± 5	4 of 4	3.00	Up
Heart	110 ± 4	4 of 4	1.04	None
Fat body	170 ± 25	4 of 4	1.61	Up
Ovary	15 ± 1	4 of 4	0.10	Down
Testis	12 ± 1	4 of 4	0.10	Down
Male accessory glands	793 ± 25	4 of 4	7.50	Up
Virgin spermatheca	246 ± 15	4 of 4	2.32	Up
Mated spermatheca	265 ± 11	4 of 4	2.50	Up
Adult carcass	241 ± 15	4 of 4	2.30	Up
Larval CNS	142 ± 2	4 of 4	1.34	Up
Larval Salivary gland	88 ± 4	4 of 4	0.84	Down
Larval midgut	261 ± 12	4 of 4	2.47	Up
Larval tubule	660 ± 19	4 of 4	6.20	Up
Larval hindgut	367 ± 27	4 of 4	3.46	Up
Larval fat body	189 ± 2	4 of 4	1.80	Up
Larval trachea	96 ± 36	4 of 4	0.91	None
Larval carcass	67 ± 4	4 of 4	0.64	Down
S2 cells (growing)	110 ± 4	4 of 4	1.04	None
Whole fly	106 ± 4	4 of 4

Looking for FBgn0051116. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720