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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051128 through 18771 annotations produced 1 hits



(CG31128):

Annotation Number : CG31128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051128
Gbrowse : chr3R:20295118-20296041 (+) // 100.0 //
Probeset : 1628681_at
Accessions : protein= NP_733000;, nucleotide= NM_170145;
FlyMine data for FBgn0051128.
BDGP gene expression has embryonic in situ data for CG31128: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051128 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head7 ± 00 of 4 0.10Down
Eye4 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland12 ± 41 of 4 0.20Down
Crop4 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart4 ± 11 of 4 0.08Down
Fat body8 ± 21 of 4 0.13Down
Ovary1 ± 00 of 4 0.00Down
Testis672 ± 184 of 411.00Up
Male accessory glands23 ± 14 of 4 0.40Down
Virgin spermatheca10 ± 22 of 4 0.17Down
Mated spermatheca10 ± 31 of 4 0.17Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS5 ± 32 of 4 0.09Down
Larval Salivary gland8 ± 02 of 4 0.15Down
Larval midgut4 ± 10 of 4 0.08Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.09Down
Larval fat body62 ± 303 of 4 1.00None
Larval trachea10 ± 31 of 4 0.17Down
Larval carcass4 ± 10 of 4 0.08Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly61 ± 34 of 4

Looking for FBgn0051128. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime