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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051140 through 18771 annotations produced 1 hits



(CG31140):

Annotation Number : CG31140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051140
Gbrowse : chr3R:19788905-19808966 (+) // 99.91 //
Probeset : 1634447_at
Accessions : protein= NP_001097894; /// NP_001097895; /// NP_651199; /// NP_996275; /// NP_996276;, nucleotide= NM_001104424; /// NM_001104425; /// NM_142942; /// NM_206552; /// NM_206553;
Interpro : 0004143 // diacylglycerol kinase activity // inferred from sequence or structural similarity /// 0004143 // diacylglycer
FlyMine data for FBgn0051140.
Homophila reports that CG31140 is a close match (3e-12) to human gene PKCC;PKCG;PRKCG;SCA14 (NP_002730), a gene associated with Spinocerebellar ataxia 14, 605361 (3).
BioGrid reports that CG31140 interacts with CG3758 CG6866 CG7835 CG9244 CG9291 CG5829 .
TRiP has 1 RNAi stocks for FBgn0051140 available for purchase.
VDRC has 4 RNAi stocks for FBgn0051140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain781 ± 184 of 427.10Up
Head122 ± 124 of 4 4.20Up
Eye197 ± 244 of 4 6.83Up
Thoracicoabdominal ganglion589 ± 394 of 420.50Up
Salivary gland10 ± 21 of 4 0.36Down
Crop87 ± 144 of 4 3.00Up
Midgut13 ± 12 of 4 0.50Down
Tubule7 ± 00 of 4 0.30Down
Hindgut27 ± 24 of 4 1.00None
Heart74 ± 94 of 4 2.60Up
Fat body20 ± 33 of 4 0.69None
Ovary1 ± 00 of 4 0.00Down
Testis12 ± 04 of 4 0.40Down
Male accessory glands25 ± 03 of 4 0.90None
Virgin spermatheca51 ± 34 of 4 1.80Up
Mated spermatheca60 ± 94 of 4 2.09Up
Adult carcass16 ± 11 of 4 0.60Down
Larval CNS501 ± 474 of 417.39Up
Larval Salivary gland3 ± 00 of 4 0.13Down
Larval midgut21 ± 20 of 4 0.76None
Larval tubule8 ± 21 of 4 0.30Down
Larval hindgut62 ± 64 of 4 2.17Up
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea10 ± 61 of 4 0.37Down
Larval carcass84 ± 54 of 4 2.94Up
S2 cells (growing)15 ± 21 of 4 0.54Down
Whole fly28 ± 34 of 4

Looking for FBgn0051140. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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