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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051155 through 18771 annotations produced 1 hits



chr3R:11048121-11048814 (-) // 100.0 // (Rpb7):

Annotation Number : CG31155
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629251_at
Accessions : protein= , nucleotide= NP_731983;
Pathway : 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II prom
Interpro : "0005622 // intracellular // inferred from electronic annotation /// 0005665 // DNA-directed RNA polymerase II
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 74 of 4 0.70Down
Head132 64 of 4 0.50Down
Eye150 54 of 4 0.58Down
Thoracicoabdominal ganglion133 34 of 4 0.50Down
Salivary gland150 124 of 4 0.58Down
Crop194 84 of 4 0.80Down
Midgut129 54 of 4 0.50Down
Tubule195 44 of 4 0.80Down
Hindgut141 34 of 4 0.50Down
Heart120 44 of 4 0.47Down
Fat body106 124 of 4 0.41Down
Ovary536 114 of 4 2.10Up
Testis186 84 of 4 0.70Down
Male accessory glands177 74 of 4 0.70Down
Virgin spermatheca84 34 of 4 0.33Down
Mated spermatheca101 34 of 4 0.39Down
Adult carcass103 24 of 4 0.40Down
Larval CNS335 194 of 4 1.30Up
Larval Salivary gland405 264 of 4 1.56Up
Larval midgut69 44 of 4 0.27Down
Larval tubule227 64 of 4 0.90None
Larval hindgut190 134 of 4 0.74Down
Larval fat body139 44 of 4 0.50Down
Larval trachea268 284 of 4 1.04None
Larval carcass121 14 of 4 0.47Down
S2 cells (growing)267 74 of 4 1.03None
Whole fly258 124 of 4

Looking for FBgn0051155. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime