FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0051200 through 18771 annotations produced 1 hits

(CG31200):

Annotation Number : CG31200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051200
Gbrowse : chr3R:16569955-16571060 (-) // 100.0 //
Probeset : 1623969_at
Accessions : protein= NP_650909;, nucleotide= NM_142652;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051200.
BDGP gene expression has embryonic in situ data for CG31200: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051200 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	60 ± 2	4 of 4	0.60	Down
Head	797 ± 21	4 of 4	7.60	Up
Eye	690 ± 22	4 of 4	6.61	Up
Thoracicoabdominal ganglion	97 ± 4	4 of 4	0.90	None
Salivary gland	8 ± 2	0 of 4	0.08	Down
Crop	164 ± 3	4 of 4	1.60	Up
Midgut	11 ± 1	1 of 4	0.10	Down
Tubule	10 ± 0	0 of 4	0.10	Down
Hindgut	26 ± 1	4 of 4	0.30	Down
Heart	25 ± 3	4 of 4	0.24	Down
Fat body	31 ± 7	4 of 4	0.31	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	3 ± 0	0 of 4	0.00	Down
Male accessory glands	12 ± 3	1 of 4	0.10	Down
Virgin spermatheca	12 ± 0	0 of 4	0.12	Down
Mated spermatheca	12 ± 1	0 of 4	0.12	Down
Adult carcass	804 ± 27	4 of 4	7.70	Up
Larval CNS	8 ± 2	3 of 4	0.08	Down
Larval Salivary gland	5 ± 1	0 of 4	0.05	Down
Larval midgut	8 ± 3	0 of 4	0.08	Down
Larval tubule	7 ± 0	1 of 4	0.10	Down
Larval hindgut	5 ± 1	0 of 4	0.05	Down
Larval fat body	6 ± 0	0 of 4	0.10	Down
Larval trachea	7 ± 8	1 of 4	0.07	Down
Larval carcass	8 ± 0	0 of 4	0.08	Down
S2 cells (growing)	2 ± 0	0 of 4	0.02	Down
Whole fly	104 ± 4	4 of 4

Looking for FBgn0051200. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720