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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051211 through 18771 annotations produced 1 hits


Annotation Number : CG31211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051211
Gbrowse : chr3R:7775401-7779880 (+) // 100.0 //
Probeset : 1625895_a_at
Accessions : protein= NP_650131; /// NP_788641; /// NP_788642;, nucleotide= NM_141874; /// NM_176464; /// NM_176465;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051211.
BioGrid reports that CG31211 interacts with CG3918 CG4602 CG5808 CG6066 CG6126 CG6843 CG9346 CG31211 CG32434 CG3314 CG3510 CG4027 CG4550 CG4818 CG5325 CG5889 CG5989 CG6632 CG7971 CG9696 CG9790 .
VDRC has 1 RNAi stocks for FBgn0051211 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain504 394 of 411.10Up
Head59 54 of 4 1.30None
Eye100 24 of 4 2.21Up
Thoracicoabdominal ganglion477 194 of 410.50Up
Salivary gland114 253 of 4 2.53None
Crop60 34 of 4 1.30Up
Midgut32 24 of 4 0.70Down
Tubule85 24 of 4 1.90Up
Hindgut61 34 of 4 1.40Up
Heart39 34 of 4 0.87None
Fat body36 64 of 4 0.80None
Ovary54 04 of 4 1.20None
Testis58 84 of 4 1.30None
Male accessory glands158 124 of 4 3.50Up
Virgin spermatheca54 14 of 4 1.19None
Mated spermatheca48 54 of 4 1.08None
Adult carcass54 64 of 4 1.20None
Larval CNS163 134 of 4 3.62Up
Larval Salivary gland83 24 of 4 1.84Up
Larval midgut27 34 of 4 0.60Down
Larval tubule51 24 of 4 1.10None
Larval hindgut42 44 of 4 0.93None
Larval fat body66 54 of 4 1.50Up
Larval trachea76 44 of 4 1.70Up
Larval carcass48 34 of 4 1.07None
S2 cells (growing)84 44 of 4 1.86Up
Whole fly45 24 of 4

Looking for FBgn0051211. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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