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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051217 through 18771 annotations produced 1 hits



predicted gene W (modSP):

Annotation Number : CG31217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051217
Gbrowse : chr3R:12478167-12481489 (-) // 100.0 //
Probeset : 1633893_at
Accessions : protein= NP_536776;, nucleotide= NM_080515;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051217.
Homophila reports that CG31217 is a close match (2e-11) to human gene LRP8;APOER2;MCI1 (NP_150643), a gene associated with {Myocardial infarction, susceptibility to}, 608446 (3).
BioGrid reports that CG31217 interacts with CG4209 CG5358 CG9653 CG4087 .
TRiP has 1 RNAi stocks for FBgn0051217 available for purchase.
VDRC has 3 RNAi stocks for FBgn0051217 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 0.20Down
Head315 ± 164 of 4 3.50Up
Eye297 ± 114 of 4 3.32Up
Thoracicoabdominal ganglion25 ± 24 of 4 0.30Down
Salivary gland64 ± 24 of 4 0.72Down
Crop940 ± 64 of 410.50Up
Midgut24 ± 21 of 4 0.30Down
Tubule6 ± 10 of 4 0.10Down
Hindgut404 ± 54 of 4 4.50Up
Heart414 ± 64 of 4 4.63Up
Fat body628 ± 414 of 4 7.02Up
Ovary19 ± 34 of 4 0.20Down
Testis23 ± 13 of 4 0.30Down
Male accessory glands5 ± 21 of 4 0.10Down
Virgin spermatheca773 ± 384 of 4 8.65Up
Mated spermatheca609 ± 304 of 4 6.82Up
Adult carcass444 ± 184 of 4 5.00Up
Larval CNS19 ± 74 of 4 0.22Down
Larval Salivary gland12 ± 41 of 4 0.14Down
Larval midgut6 ± 30 of 4 0.07Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut171 ± 54 of 4 1.91Up
Larval fat body385 ± 434 of 4 4.30Up
Larval trachea246 ± 344 of 4 2.76Up
Larval carcass117 ± 244 of 4 1.32None
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly89 ± 74 of 4

Looking for FBgn0051217. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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