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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051219 through 18771 annotations produced 1 hits



(CG31219):

Annotation Number : CG31219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051219
Gbrowse : chr3R:15476983-15478063 (+) // 100.0 //
Probeset : 1627572_at
Accessions : protein= NP_001097837; /// NP_732441;, nucleotide= NM_001104367; /// NM_169869;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051219.
Homophila reports that CG31219 is a close match (3e-11) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 1 RNAi stocks for FBgn0051219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 1.20None
Head3 ± 10 of 4 1.00None
Eye2 ± 00 of 4 0.75None
Thoracicoabdominal ganglion6 ± 10 of 4 2.00None
Salivary gland2 ± 00 of 4 0.93None
Crop2 ± 00 of 4 0.70None
Midgut4 ± 10 of 4 1.30None
Tubule9 ± 10 of 4 2.90Up
Hindgut4 ± 20 of 4 1.40None
Heart0 ± 00 of 4 0.26None
Fat body2 ± 10 of 4 0.96None
Ovary1 ± 00 of 4 0.40None
Testis5 ± 10 of 4 1.90None
Male accessory glands6 ± 20 of 4 2.00None
Virgin spermatheca2 ± 00 of 4 0.70None
Mated spermatheca4 ± 10 of 4 1.59None
Adult carcass7 ± 20 of 4 2.40None
Larval CNS1 ± 00 of 4 0.46None
Larval Salivary gland2 ± 10 of 4 0.82None
Larval midgut5 ± 10 of 4 1.82None
Larval tubule2 ± 10 of 4 1.00None
Larval hindgut1 ± 00 of 4 0.37None
Larval fat body5 ± 20 of 4 1.90None
Larval trachea1 ± 20 of 4 0.58None
Larval carcass3 ± 10 of 4 1.28None
S2 cells (growing)4 ± 10 of 4 1.46None
Whole fly3 ± 10 of 4

Looking for FBgn0051219. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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