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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051221 through 18771 annotations produced 1 hits



(CG31221):

Annotation Number : CG31221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051221
Gbrowse : chr3R:15238415-15282989 (+) // 100.0 //
Probeset : 1625462_s_at
Accessions : protein= NP_732424; /// NP_732425;, nucleotide= NM_169860; /// NM_169861;
Interpro : 0030228 // lipoprotein receptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0051221.
BDGP gene expression has embryonic in situ data for CG31221: 26 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0051221 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1734 ± 364 of 432.80Up
Head396 ± 244 of 4 7.50Up
Eye87 ± 134 of 4 1.66None
Thoracicoabdominal ganglion1259 ± 734 of 423.80Up
Salivary gland24 ± 43 of 4 0.46Down
Crop12 ± 33 of 4 0.20Down
Midgut17 ± 11 of 4 0.30Down
Tubule8 ± 10 of 4 0.20Down
Hindgut14 ± 13 of 4 0.30Down
Heart11 ± 23 of 4 0.22Down
Fat body20 ± 44 of 4 0.39Down
Ovary6 ± 10 of 4 0.10Down
Testis9 ± 04 of 4 0.20Down
Male accessory glands13 ± 22 of 4 0.30Down
Virgin spermatheca12 ± 13 of 4 0.24Down
Mated spermatheca9 ± 21 of 4 0.18Down
Adult carcass36 ± 34 of 4 0.70Down
Larval CNS504 ± 574 of 4 9.53Up
Larval Salivary gland12 ± 20 of 4 0.23Down
Larval midgut8 ± 22 of 4 0.16Down
Larval tubule9 ± 04 of 4 0.20Down
Larval hindgut7 ± 11 of 4 0.15Down
Larval fat body14 ± 42 of 4 0.30Down
Larval trachea10 ± 23 of 4 0.19Down
Larval carcass19 ± 24 of 4 0.36Down
S2 cells (growing)14 ± 14 of 4 0.28Down
Whole fly52 ± 44 of 4

Looking for FBgn0051221. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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