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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051224 through 18771 annotations produced 1 hits



lethal (3) c00083 (CG31224):

Annotation Number : CG31224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051224
Gbrowse : chr3R:14475842-14484963 (-) // 100.0 //
Probeset : 1632819_at
Accessions : protein= NP_732361;, nucleotide= NM_169826;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0051224.
Homophila reports that CG31224 is a close match (5e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG31224 interacts with CG31999 CG5111 CG5700 CG8145 CG8301 .
TRiP has 1 RNAi stocks for FBgn0051224 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain516 114 of 4 3.80Up
Head153 44 of 4 1.10Up
Eye127 84 of 4 0.94None
Thoracicoabdominal ganglion320 74 of 4 2.40Up
Salivary gland124 134 of 4 0.92None
Crop125 34 of 4 0.90None
Midgut117 04 of 4 0.90Down
Tubule104 44 of 4 0.80Down
Hindgut141 74 of 4 1.00None
Heart92 54 of 4 0.68Down
Fat body134 64 of 4 1.00None
Ovary403 64 of 4 3.00Up
Testis41 34 of 4 0.30Down
Male accessory glands130 74 of 4 1.00None
Virgin spermatheca132 94 of 4 0.98None
Mated spermatheca108 74 of 4 0.80Down
Adult carcass95 04 of 4 0.70Down
Larval CNS424 324 of 4 3.14Up
Larval Salivary gland184 74 of 4 1.36Up
Larval midgut155 74 of 4 1.15None
Larval tubule242 114 of 4 1.80Up
Larval hindgut192 94 of 4 1.42Up
Larval fat body263 134 of 4 2.00Up
Larval trachea138 74 of 4 1.03None
Larval carcass245 304 of 4 1.82Up
S2 cells (growing)185 134 of 4 1.37Up
Whole fly135 54 of 4

Looking for FBgn0051224. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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