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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051233 through 18771 annotations produced 1 hits



(CG31233):

Annotation Number : CG31233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051233
Gbrowse : chr3R:17575574-17578959 (+) // 100.0 //
Probeset : 1632461_at
Accessions : protein= NP_732653;, nucleotide= NM_169965;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0051233.
BDGP gene expression has embryonic in situ data for CG31233: 11 pix of staining in 2 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye5 ± 20 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.01Down
Crop3 ± 10 of 4 0.00Down
Midgut3780 ± 784 of 4 6.30Up
Tubule742 ± 434 of 4 1.20Up
Hindgut367 ± 94 of 4 0.60None
Heart3 ± 10 of 4 0.01Down
Fat body2 ± 00 of 4 0.00Down
Ovary4 ± 10 of 4 0.00Down
Testis8 ± 00 of 4 0.00Down
Male accessory glands11 ± 31 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca5 ± 10 of 4 0.01Down
Adult carcass8 ± 40 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland4 ± 10 of 4 0.01Down
Larval midgut3463 ± 1144 of 4 5.77Up
Larval tubule474 ± 184 of 4 0.80None
Larval hindgut556 ± 544 of 4 0.93None
Larval fat body13 ± 21 of 4 0.00Down
Larval trachea5 ± 30 of 4 0.01Down
Larval carcass8 ± 10 of 4 0.01Down
S2 cells (growing)5 ± 10 of 4 0.01Down
Whole fly599 ± 794 of 4

Looking for FBgn0051233. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime