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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051249 through 18771 annotations produced 1 hits


Annotation Number : CG31249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051249
Gbrowse : chr3R:13511398-13512783 (-) // 100.0 //
Probeset : 1625242_at
Accessions : protein= NP_732262;, nucleotide= NM_169774;
FlyMine data for FBgn0051249.
BDGP gene expression has embryonic in situ data for CG31249: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051249 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 54 of 4 0.70Down
Head63 44 of 4 0.50Down
Eye66 24 of 4 0.52Down
Thoracicoabdominal ganglion94 24 of 4 0.70Down
Salivary gland32 24 of 4 0.26Down
Crop62 54 of 4 0.50Down
Midgut51 24 of 4 0.40Down
Tubule58 34 of 4 0.50Down
Hindgut39 14 of 4 0.30Down
Heart49 44 of 4 0.39Down
Fat body74 44 of 4 0.58Down
Ovary230 94 of 4 1.80Up
Testis144 64 of 4 1.10None
Male accessory glands261 174 of 4 2.00Up
Virgin spermatheca56 34 of 4 0.44Down
Mated spermatheca50 24 of 4 0.40Down
Adult carcass53 34 of 4 0.40Down
Larval CNS152 144 of 4 1.20Up
Larval Salivary gland47 54 of 4 0.38Down
Larval midgut69 24 of 4 0.55Down
Larval tubule78 44 of 4 0.60Down
Larval hindgut77 24 of 4 0.61Down
Larval fat body94 94 of 4 0.70Down
Larval trachea90 114 of 4 0.71Down
Larval carcass83 74 of 4 0.66Down
S2 cells (growing)101 44 of 4 0.79Down
Whole fly127 54 of 4

Looking for FBgn0051249. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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