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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051266 through 18771 annotations produced 1 hits



(CG31266):

Annotation Number : CG31266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051266
Gbrowse : chr3R:12958415-12959300 (+) // 100.0 //
Probeset : 1632755_at
Accessions : protein= NP_001138068; /// NP_732213;, nucleotide= NM_001144596; /// NM_169750;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051266.
BDGP gene expression has embryonic in situ data for CG31266: 4 pix of staining in 1 body parts.
Homophila reports that CG31266 is a close match (9e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 3 RNAi stocks for FBgn0051266 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland4 10 of 4 0.03Down
Crop0 00 of 4 0.00Down
Midgut1061 664 of 4 8.40Up
Tubule27 260 of 4 0.20Down
Hindgut386 214 of 4 3.10Up
Heart1 00 of 4 0.01Down
Fat body1 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands3 20 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.01Down
Adult carcass1 00 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut1108 234 of 4 8.75Up
Larval tubule1 00 of 4 0.00Down
Larval hindgut14 101 of 4 0.11Down
Larval fat body1 00 of 4 0.00Down
Larval trachea0 00 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly126 254 of 4

Looking for FBgn0051266. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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