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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051269 through 18771 annotations produced 1 hits



(CG31269):

Annotation Number : CG31269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051269
Gbrowse : chr3R:12952852-12953614 (+) // 100.0 //
Probeset : 1639395_at
Accessions : protein= NP_001097818;, nucleotide= NM_001104348;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051269.
Homophila reports that CG31269 is a close match (2e-11) to human gene F12;HAE3;HAF (NP_000496), a gene associated with Angioedema, hereditary, type III, 610618 (3);Factor XII deficiency, 234000 (3).
VDRC has 3 RNAi stocks for FBgn0051269 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland10 ± 30 of 4 0.35None
Crop1 ± 00 of 4 0.00Down
Midgut226 ± 214 of 4 7.80Up
Tubule7 ± 30 of 4 0.30Down
Hindgut50 ± 64 of 4 1.70None
Heart2 ± 10 of 4 0.09Down
Fat body3 ± 30 of 4 0.11Down
Ovary2 ± 10 of 4 0.10Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.12Down
Mated spermatheca5 ± 20 of 4 0.17Down
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.05Down
Larval Salivary gland3 ± 00 of 4 0.11Down
Larval midgut248 ± 104 of 4 8.58Up
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut3 ± 00 of 4 0.13Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.08Down
Larval carcass1 ± 00 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly29 ± 64 of 4

Looking for FBgn0051269. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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