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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051279 through 18771 annotations produced 1 hits



(CG31279):

Annotation Number : CG31279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051279
Gbrowse : chr3R:12256542-12258518 (+) // 100.0 //
Probeset : 1624609_at
Accessions : protein= NP_001163630; /// NP_732136;, nucleotide= NM_001170159; /// NM_169717;
FlyMine data for FBgn0051279.
VDRC has 1 RNAi stocks for FBgn0051279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 01 of 4 0.40Down
Head11 ± 13 of 4 0.80None
Eye3 ± 10 of 4 0.28Down
Thoracicoabdominal ganglion9 ± 11 of 4 0.70Down
Salivary gland17 ± 41 of 4 1.20None
Crop4 ± 10 of 4 0.30Down
Midgut11 ± 01 of 4 0.80None
Tubule12 ± 02 of 4 0.90Down
Hindgut5 ± 20 of 4 0.40Down
Heart4 ± 10 of 4 0.32Down
Fat body9 ± 41 of 4 0.68None
Ovary15 ± 24 of 4 1.10None
Testis86 ± 34 of 4 6.10Up
Male accessory glands12 ± 30 of 4 0.90None
Virgin spermatheca7 ± 12 of 4 0.51Down
Mated spermatheca8 ± 11 of 4 0.59Down
Adult carcass7 ± 21 of 4 0.60None
Larval CNS5 ± 11 of 4 0.39Down
Larval Salivary gland10 ± 20 of 4 0.72None
Larval midgut8 ± 10 of 4 0.61Down
Larval tubule11 ± 13 of 4 0.80None
Larval hindgut4 ± 10 of 4 0.29Down
Larval fat body31 ± 84 of 4 2.20None
Larval trachea8 ± 12 of 4 0.60Down
Larval carcass8 ± 10 of 4 0.61Down
S2 cells (growing)10 ± 03 of 4 0.72Down
Whole fly14 ± 14 of 4

Looking for FBgn0051279. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime