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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051286 through 18771 annotations produced 1 hits


(CG31286):

Annotation Number : CG31286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051286
Gbrowse : chr3R:2466953-2469070 (+) // 100.0 //
Probeset : 1625025_a_at
Accessions : protein= NP_731102; /// NP_731103;, nucleotide= NM_169151; /// NM_169152;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0051286.
VDRC has 3 RNAi stocks for FBgn0051286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.15Down
Crop1 ± 00 of 4 0.00Down
Midgut15 ± 33 of 4 0.30Down
Tubule11 ± 10 of 4 0.20Down
Hindgut2 ± 10 of 4 0.10Down
Heart2 ± 01 of 4 0.05Down
Fat body4 ± 30 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis869 ± 264 of 416.80Up
Male accessory glands8 ± 20 of 4 0.20Down
Virgin spermatheca12 ± 30 of 4 0.24Down
Mated spermatheca14 ± 30 of 4 0.28Down
Adult carcass9 ± 20 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland4 ± 10 of 4 0.09Down
Larval midgut7 ± 10 of 4 0.14Down
Larval tubule3 ± 20 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.04Down
Larval fat body73 ± 443 of 4 1.40None
Larval trachea5 ± 30 of 4 0.11Down
Larval carcass2 ± 10 of 4 0.05Down
S2 cells (growing)3 ± 10 of 4 0.06Down
Whole fly51 ± 64 of 4

Looking for FBgn0051286. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime