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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051288 through 18771 annotations produced 1 hits



(CG31288):

Annotation Number : CG31288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051288
Gbrowse : chr3R:21123714-21125222 (-) // 100.0 //
Probeset : 1625042_at
Accessions : protein= NP_733094;, nucleotide= NM_170215;
FlyMine data for FBgn0051288.
VDRC has 3 RNAi stocks for FBgn0051288 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 14 of 4 0.10Down
Head112 ± 24 of 4 0.50Down
Eye20 ± 44 of 4 0.09Down
Thoracicoabdominal ganglion7 ± 00 of 4 0.00Down
Salivary gland7 ± 20 of 4 0.03Down
Crop5 ± 10 of 4 0.00Down
Midgut1291 ± 614 of 4 6.00Up
Tubule4449 ± 2854 of 420.60Up
Hindgut384 ± 484 of 4 1.80Up
Heart28 ± 44 of 4 0.13Down
Fat body157 ± 234 of 4 0.73None
Ovary4 ± 00 of 4 0.00Down
Testis37 ± 34 of 4 0.20Down
Male accessory glands31 ± 24 of 4 0.10Down
Virgin spermatheca123 ± 74 of 4 0.57Down
Mated spermatheca158 ± 144 of 4 0.73None
Adult carcass68 ± 54 of 4 0.30Down
Larval CNS1 ± 20 of 4 0.01Down
Larval Salivary gland24 ± 24 of 4 0.11Down
Larval midgut352 ± 344 of 4 1.64Up
Larval tubule176 ± 444 of 4 0.80None
Larval hindgut134 ± 84 of 4 0.62Down
Larval fat body60 ± 244 of 4 0.30Down
Larval trachea6 ± 11 of 4 0.03Down
Larval carcass14 ± 22 of 4 0.07Down
S2 cells (growing)3 ± 10 of 4 0.02Down
Whole fly215 ± 204 of 4

Looking for FBgn0051288. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime