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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051313 through 18771 annotations produced 1 hits



(CG31313):

Annotation Number : CG31313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051313
Gbrowse : chr3R:10392301-10393148 (-) // 100.0 //
Probeset : 1631761_at
Accessions : protein= NP_731919;, nucleotide= NM_169586;
Interpro : 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidas
FlyMine data for FBgn0051313.
BDGP gene expression has embryonic in situ data for CG31313: 21 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0051313 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 34 of 4 0.10Down
Head1882 ± 1864 of 4 4.10Up
Eye847 ± 514 of 4 1.85Up
Thoracicoabdominal ganglion43 ± 84 of 4 0.10Down
Salivary gland79 ± 54 of 4 0.17Down
Crop882 ± 424 of 4 1.90Up
Midgut19 ± 23 of 4 0.00Down
Tubule21 ± 23 of 4 0.00Down
Hindgut145 ± 54 of 4 0.30Down
Heart1614 ± 2464 of 4 3.52Up
Fat body1145 ± 454 of 4 2.50Up
Ovary8 ± 11 of 4 0.00Down
Testis56 ± 54 of 4 0.10Down
Male accessory glands12 ± 22 of 4 0.00Down
Virgin spermatheca1667 ± 1554 of 4 3.64Up
Mated spermatheca984 ± 954 of 4 2.15Up
Adult carcass2190 ± 454 of 4 4.80Up
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland301 ± 194 of 4 0.66Down
Larval midgut193 ± 114 of 4 0.42Down
Larval tubule42 ± 34 of 4 0.10Down
Larval hindgut594 ± 524 of 4 1.30None
Larval fat body3134 ± 2854 of 4 6.80Up
Larval trachea2076 ± 1564 of 4 4.53Up
Larval carcass3092 ± 4144 of 4 6.74Up
S2 cells (growing)10 ± 11 of 4 0.02Down
Whole fly458 ± 454 of 4

Looking for FBgn0051313. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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