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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051326 through 18771 annotations produced 1 hits



(CG31326):

Annotation Number : CG31326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051326
Gbrowse : chr3R:10043854-10045927 (-) // 100.0 //
Probeset : 1625598_at
Accessions : protein= NP_650344;, nucleotide= NM_142087;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051326.
BDGP gene expression has embryonic in situ data for CG31326: 4 pix of staining in 1 body parts.
Homophila reports that CG31326 is a close match (5e-11) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 3 RNAi stocks for FBgn0051326 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 24 of 4 0.10Down
Head695 ± 304 of 4 3.00Up
Eye590 ± 254 of 4 2.54Up
Thoracicoabdominal ganglion29 ± 24 of 4 0.10Down
Salivary gland347 ± 164 of 4 1.49Up
Crop305 ± 84 of 4 1.30Up
Midgut8 ± 10 of 4 0.00Down
Tubule25 ± 43 of 4 0.10Down
Hindgut97 ± 14 of 4 0.40Down
Heart1281 ± 644 of 4 5.51Up
Fat body1897 ± 1664 of 4 8.16Up
Ovary5 ± 02 of 4 0.00Down
Testis7 ± 00 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca2066 ± 564 of 4 8.88Up
Mated spermatheca1648 ± 414 of 4 7.09Up
Adult carcass1065 ± 384 of 4 4.60Up
Larval CNS4 ± 10 of 4 0.02Down
Larval Salivary gland4 ± 20 of 4 0.02Down
Larval midgut7 ± 20 of 4 0.03Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut10 ± 11 of 4 0.05Down
Larval fat body36 ± 64 of 4 0.20Down
Larval trachea20 ± 144 of 4 0.09Down
Larval carcass18 ± 01 of 4 0.08Down
S2 cells (growing)3 ± 02 of 4 0.02Down
Whole fly232 ± 114 of 4

Looking for FBgn0051326. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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